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Faculty Profile

 

   

Dr. Gopal Chakraborti
M.Sc, Ph.D

Senior Lecturer, GCGEB, Calcutta University

Email:gcbcg@caluniv.ac.in

  Educational Qualification

B.Sc (Hons) Chemistry – S.A, Jaipuria College, Calcutta, Calcutta University

M.Sc (Chemistry) – Dept. of Chemistry (Organic Chemistry), Calcutta University

Ph.D (Biochemistry) – Bose Institute, Jadavpur University

  Important Publications

1. Das A, Sinha S, Paul P, Acharya, B, Bhattacharyya, B and Chakrabarti, G. Deuterium Oxide stabilizes conformation of tubulin: A Biophysical and Biochemical study”. BMB Reports 41(1), 62-67, 2008.

2. Acharya, B., Bhattacharyya, B., and Chakrabarti, G. The natural naphthoquinone plumbagin exhibits antiproliferative activity and disrupts the microtubule network through tubulin binding. Biochemistry 47, 7838-7845, (2008). (Highly accessed)

3. Bandhu, A., Ganguly, T., Chanda, P. K., Das, M., Jana, B., Chakrabarti G., and Sau, S. (. Na+ and Mg2+ have antagonistic effects on the structure, function and stability of mycobacteriophage L1 repressor. BMB Reports 42,  293-298, (2009).

4.Das, A, Bhattacharya, A., and Chakrabarti, G. Cigarette smoke extract induces disruption of structure and function of tubulin-microtubule in lung epithelium cells and in vitro. Chem. Res. Toxicol. (ACS publication). 22, 446-459, (2009).

 5. Acharya, B., Chaudhuri D, Das, A, and Chakrabarti, G. Vitamin K3 Disrupts the Microtubule Networks By Tubulin Binding: A Novel Mechanism of Its Antiproliferative Activity. Biochemistry 48, 6863-6874, (2009).

6.Mukherjee, S., Acharya, B.,   Bhattacharyya, B., and Chakrabarti, G. Genistein Arrests Cell Cycle Progression of A549 cells  at G2/M  And Depolymerizes Interphase Microtubules Through  Binding to a Unique Site of Tubulin. Biochemistry, 49, 1702-1712, (2010).

7. Das, A.,  Chakrabarty, S., Chaudhury, D., and Chakrabarti, G. 1,4-Benzoquinone (PBQ) induced toxicity in lung epithelial cells is mediated by the disruption of the Microtubule network and activation of Caspase-3. Chem. Res. Toxicol. (ACS publication) 23(6), 1054-1066, (2010).

8. Chaudhury, D., Das, A., Bhattacharya, A., and Chakrabarti, G. Aqueous extract of ginger shows antiproliferative activity through disruption of microtubule network of cancer cells. Food and Chemical Toxicology 48(10), 2872-2880, (2010).

9. Chanda PK, Bandhu A, Jana B, Mondal R, Ganguly T, Sau K, Lee CY, Chakrabarti G, Sau S. Characterization of an unusual cold shock protein from Staphylococcus aureus. J Basic Microbiol.  50, 519-526, (2010). 

10. Deb T, Choudhury D, Guin PS, Saha MB,  Chakrabarti G*,  and Das S*. A complex of Co(II) with 2-hydroxyphenyl-azo-2-naphthol (HPAN) is far less cytotoxic than the parent compound on A549-lung carcinoma and peripheral blood mononuclear cells: Reasons for reduction in cytotoxicity. Chem Biol Interact.189, 206-14, (2011). (* Joint corresponding authors).

11.Chakrabarty S, Das A, Bhattacharya A, and Chakrabarti G. Theaflavins Depolymerize Microtubule Network through Tubulin Binding and Cause Apoptosis of Cervical Carcinoma HeLa Cells. J Agric Food Chem. 59,  2040-2048, (2011).

12. Acharya B, Bhattacharyya, S., Choudhury, D., and Chakrabarti, G. The microtubule depolymerizing agent naphtazarin induces both apoptosis and autophagy in A549 lung cancer cells. Apoptosis 16, 924-939, (2011).  



  Research interests

Development of anti-tumor agent from natural compounds targeting tubulin-microtubule system, a major cytoskeleton protein.

Tubulin-microtubule has very important role in cell division. Because it is dynamic in nature and participates in mitosis, it has been one most successful drug target in cancer chemotherapy. Taxol, which stabilized microtubule and disrupts microtubule dynamics, one of the most successful anti-cancer drug, has been used for treatment of ovarian, breast and non-small cell lung carcinomas. Vinka alkaloid (vinblastine, vincristine), which inhibits tubulin polymerization into microtubule, is used for actuate lymphoblastic leukemia (ALL) and other pediatric malignancies. But drug resistance and toxicity remains a significant problem in treatment of malignancies with taxol and vinka alkaloids. We need to develop new anti-tumor drug which would be more potent and less toxic to normal cells.

 

We are working on development of potential microtubule inhibitors which could be used for anti-cancer therapy. We got good results in cancer cell lines experiments with some of the agents.

We have found many compounds as well as extracts that act as antimitotic agent, like; Plumbagin (5-hydroxy-2-methyl-1, 4-naphthoquinone), a naphthoquinone isolated from the roots of Plumbaginaceae plants and many other flavones, flavonoids, naphthoquinones and other naturally occurring poly phenols.

 

Normal cell cycle phase distribution of HeLa cells (A), G2/M arrest of cell cycle (B) and cellular apoptosis (C) upon drug treatment.

 

(A) Control A549 cells with nicely grown interphase microtubule, cells with altered cellular cytoskeletal structure and (B) antimitotic targeted compound treated disrupted microtubule structure. 

Expression of tubulin isotypes for understanding mechanism of drug-resistance and development in cancer

Tubulin is a cell division protein many drugs have been targeted to tubulin for the arrest of microtubule dynamics, as a measure of treatment of cancer. The main problem in cancer treatment is the resistance of the cancer to the chemotheraupeutic drug.

There are six isotypes of α- tubulin and seven isotypes of β-tubulin so far known in human. The expression of different tubulin isotype is tissue specific. In general in cancerous cell line, overexpression of some β-tubulin isotypes has been observed. It is not known till date that by what mechanism tumors become resistant to drugs. It is believed that increase of specific tubulin isotype (bIII) or mutation of  a or  b may cause resistance to such drugs. Due to this, development of a mammalian tubulin expression system in baculovirus-insect cells may not only help to solve this long standing problem but also provide a target model system to develop new potential anti-tumor drug. Thus based upon this study, new drugs could be designed and synthesized with the help of synthetic chemistry.

Expression of Plasmodium falciparum tubulin in baculovirus-insect cell system for development of anti-malarial drug’

Malaria is the world's most important tropical disease. In India and in sub-Saharan Africa, Malaria exacts an enormous toll in lives, in medical costs, and in days of labor lost. Among four human malarial parasites, Plasmodium falciparum is the predominant cause of mortality but drug resistance strains are major problem of treatment of malaria. In India, 65% Plasmodium falciparum strains are resistant to chloroquine, a commonly used drug for treatment of malaria. This indeed calls for the quest of new and more effective chemotherapeutic agents to combat the disease. Our plan would be to attempt to develop a new anti-malaria drug by targeting tubulin, a major cytoskeleton protein. For studying drug binding, protein in the scale of milligrams is required. We project have cloned tubulin of Plasmodium falciparum into baculovirus-insect cell vector for expression of the protein in insect cell (Sf9). After purification of protein attempts would be made to screen drugs that specifically bind Plasmodium falciparun tubulin but not mammalian tubulin.

Tubulin-Microtubule is the prime target for various environmental pollutants and toxicants in cells

Control lung epithelial cells
AECS treated rounded cells 

The disruption of the cellular microtubules leads to apoptosis of the mammalian cells. Tubulin-Microtubule may be a major target for various environmental pollutants and toxic chemicals which result in cell damage and apoptosis. Treatment of the lung epithelial cells with the aqueous extract of cigarette smoke (AECS) results in the loss of their regular shape and morphology and the cells become rounded.

We have already established that tubulin cytoskeleton is the prime target for the aqueous extract of cigarette smoke (AECS), which causes extensive damage of the lung tissue 

Consumption of smokeless tobacco leads to the damage of the oral epithelial cells. Tubulin-microtubule is found to be a potential target for smokeless tobacco extract (SLT) and it is one of the mechanisms of the SLT induced damage of the oral tissue.

  Lab Members

Subhendu Chakrabarty

PhD student (junior research fellow)

scmcba83@gmail.com

Diptiman Choudhury

PhD student (senior research fellow)

diptiman.choudhury@gmail.com

Bipul R. Acharya

PhD student (senior research fellow)

BIPULACHARYA@gmail.com

AmlanDas

PhD student (senior research fellow)

amlan.das@gmail.com

Sumita Mukherjee

PhD student (senior research fellow)

sumitabiochem@gmail.com

Avijit Bhattacharyya

PhD student (Senior research fellow)

 

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